QIBC Plot

Quantitative Image Based Cytometry · offline app

1 · Data

Load CellProfiler CSV

No data loaded.

Grouping (metadata) column

2 · Channels

X axis — total DNA / DAPI (integrated) Y axis — mean intensity

Log₁₀ Y axis

Point colour — 3rd channel

3 · Axis & colour limits

X limits (min / max)

Y limits (min / max)

Colour limits (min / max)

Squish out-of-range colour values to limits

4 · Appearance

Colour palette

Point size Marker opacity

Grey point outline

5 · Conditions (order & include)

Drag to reorder · untick to hide a condition.

6 · Dot-bar plot

Y channel Y limits (min / max)

Show per-condition mean line

Only cells inside X/Y/colour gate

Mean line drawn in blue, matching the original qibcPlot script.

3-variable scatter

Dot-bar plot

QIBC scatter stages cells by cell-cycle position (total DNA vs. a mean-intensity marker) and colours by a third channel. Reimplementation of qibcPlot (callum-jpg) in a single offline HTML file — data is parsed in your browser and never uploaded. Plots export via the camera icon or the Download button.